Associated Group and Project

• The Bentley Group
• The Global Pneumococcal Sequencing Project

Projects

• GPS Unified Pipeline
  • a Nextflow pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files)
  • source code: https://github.com/HarryHung/gps-unified-pipeline
• GPS Visualiser
  • a visual summary of findings in the GPS project
  • Python on the back-end, and HTML5 and JavaScript on the front-end
  • available here: https://www.pneumogen.net/gps/gps-visualiser/
  • source code: https://github.com/HarryHung/gps-visualiser

• GPS Database Processor
  • a Python tool for processing GPS database updates
  • source code: https://github.com/HarryHung/gps-database-processor

• GPS Database Overview
  • a visual overview of public data from the GPS project that is available via Monocle
  • built with HTML5 and JavaScript
  • source code: https://github.com/HarryHung/gps-database-overview